| Franklin, Alan B. | 2010 | "Antibody Responses of Raccoons Naturally Exposed to Influenza A Virus" in Vector borne and zoonotic diseases | 
              
                      | Franklin, Alan B. | 2011 | "The role of European starlings in the spread of coccidia within concentrated animal feeding operations" in Veterinary Parasitology | 
              
                      | Franklin, Alan B. | 2011 | "Targeted surveillance for highly pathogenic avian influenza in migratory waterfowl across the conterminous United States" in Pandemic influenza viruses: Science, surveillance, and public health | 
              
                      | Franklin, Alan B. | 2011 | "Avian influenza virus in aquatic environments: An ecological perspective" in Pandemic influenza viruses: Science, surveillance, and public health | 
              
                      | Franklin, Alan B. | 2011 | "Who hits and hoots at whom? Potential for interference competition between barred and northern spotted owls" in Biological Conservation | 
              
                      | Franklin, Alan B. | 2011 | "The role of starlings in the spread of Salmonella within concentrated animal feeding operations" in Journal of Applied Ecology | 
              
                      | Franklin, Alan B. | 2011 | Population Demography of Northern Spotted Owls | 
              
                      | Franklin, Alan B. | 2011 | "Wild Bird's-Eye View of Influenza Virus A(H1N1) Phylogenetic Evolution" in EcoHealth | 
              
                      | Franklin, Alan B. | 2012 | "Low-Pathogenic Avian Influenza Viruses in Wild House Mice" in PLoS ONE | 
              
                      | Franklin, Alan B. | 2012 | "Quantification of heterosubtypic immunity between avian influenza subtypes H3N8 and H4N6 in multiple avian host species" in Journal of General Virology | 
              
                      | Franklin, Alan B. | 2012 | "The effect of European starlings and ambient air temperature on Salmonella enterica contamination within cattle feed bunks" in Human-Wildlife Interactions | 
              
                      | Franklin, Alan B. | 2012 | "Potential Influences of Climate and Nest Structure on Spotted Owl Reproductive Success: A Biophysical Approach" in PLoS ONE | 
              
                      | Franklin, Alan B. | 2012 | "Molecular Surveillance of Low Pathogenic Avian Influenza Viruses in Wild Birds across the United States: Inferences from the Hemagglutinin Gene" in PLoS ONE | 
              
                      | Franklin, Alan B. | 2012 | "Freshwater Clams As Bioconcentrators of Avian Influenza Virus in Water" in Vector borne and zoonotic diseases | 
              
                      | Franklin, Alan B. | 2013 | "Wild Ungulates as Disseminators of Shiga Toxin-Producing Escherichia coli in Urban Areas" in PLoS ONE | 
              
                      | Franklin, Alan B. | 2013 | "Detection of Avian Influenza Viruses in Wild Waterbirds in the Rift Valley of Kenya Using Fecal Sampling" in Vector borne and zoonotic diseases | 
              
                      | Franklin, Alan B. | 2013 | "Failure of transmission of low-pathogenic avian influenza virus between mallards and freshwater snails: An experimental evaluation" in Journal of Wildlife Diseases | 
              
                      | Franklin, Alan B. | 2013 | "Population Management to Reduce the Risk of WiId life-Aircraft Collisions" in Wildlife management in airport environments: Preventing animal-aircraft collisions through science-based management | 
              
                      | Franklin, Alan B. | 2014 | "Extended Viral Shedding of a Low Pathogenic Avian Influenza Virus by Striped Skunks (Mephitis mephitis)" in PLoS ONE | 
              
                      | Franklin, Alan B. | 2014 | "Using Quantitative Disease Dynamics as a Tool for Guiding Response to Avian Influenza in Poultry in the United States of America" in Preventive Veterinary Medicine | 
              
                      | Franklin, Alan B. | 2014 | "One Health in Action: Reducing Feral Swine Damage and Disease" in One Health Newsletter | 
              
                      | Franklin, Alan B. | 2014 | "Ecological Routes of Avian Influenza Virus Transmission to a Common Mesopredator: An Experimental Evaluation of Alternatives" in PLoS ONE | 
              
                      | Franklin, Alan B. | 2014 | "Shedding of a Low Pathogenic Avian Influenza Virus in a Common Synanthropic Mammal – The Cottontail Rabbit" in PLoS ONE | 
              
                      | Franklin, Alan B. | 2015 | "Susceptibility of rock doves to low-pathogenic avian influenza A viruses" in Archives of Virology | 
              
                      | Franklin, Alan B. | 2015 | "Effects of barred owl (Strix varia) range expansion on Haemoproteus parasite assemblage dynamics and transmission in barred and northern spotted owls (Strix occidentalis caurina)" in Biological Invasions |