"Larval Transport and Coastal Upwelling: An Application of HF Radar in Ecological Research" in Oceanography

"Viable salmonid populations and the recovery of evolutionarily significant units" in NOAA Technical Memorandum NMFS-NWFSC-42

"Stock-recruitment relationships for life cycles that exhibit concurrent density dependence" in Canadian Journal of Fisheries and Aquatic Sciences

"Distributions of larval rockfishes Sebastes spp. across nearshore fronts in a coastal upwelling region" in Marine Ecology Progress Series

"An analysis of historical population structure for evolutionary significant units of chinook salmon, coho salmon, and steelhead in the north-central California coast recovery domain" in NOAA Technical Memorandum NMFS-SWFSC-382. 210

"DARR 2.0 updated software for estimating abundance from stratified mark-recapture data" in NOAA Technical Memorandum NMFS-SWFSC-368

"Marine Species" in The Endangered Species Act at Thirty, Vol. 1: Renewing the Conservation Promise

"Working Seascapes" in The Endangered Species Act at Thirty, Vol. 2: Conserving Biodiversity in Human-Dominated Landscapes

"A framework for assessing the viability of threatened and endangered salmon and steelhead in the north-central California coast recovery domain" in NOAA Technical Memorandum NMFS-SWFSC-423

"Population Characteristics of the Mangrove Crab Scylla serrata (Decapoda: Portunidae) in Kosrae, Federated States of Micronesia: Effects of Harvest and Implications for Management" in Pacific Science

"State of the California Current 2009-2010" Regional Variation Persists through Transition from La Nina to El Nino (and back?)" in Califonria Cooperative Oceanic Fisheries Investigations Reports

"State of the California current 2010-2011: Regionally variable responses to a strong (but fleeting?) la Nina" in Reports of California Cooperative Oceanic Fisheries Investigations

"Predation on Juvenile Pacific Salmon Oncorhynchus spp. in Downstream Migrant Traps in Prairie Creek, California" in North American Journal of Fisheries Management

"State of the California Current 2011–2012: Ecosystems Respond To Local Forcing as La Nina Wavers and Wanes" in CalCOFI Report

"Ichthyological Assemblage and Variation in a Northern California Zostera marina Eelgrass Bed" in Northwestern Naturalist

"State of the California Current 2012-13: No Such Thing as an "Average" Year" in CalCOFI Report

"State of the California Current 2011–2012: Ecosystems Respond To Local Forcing as La Niña Wavers and Wanes" in Reports of California Cooperative Oceanic Fisheries Investigations

"Distribution of Pelagic Juvenile Rockfish (Sebastes spp.) in Relation to Temperature and Fronts Off Central California" in Reports of California Cooperative Oceanic Fisheries Investigations

"State of the California current 2013-14: El niño looming" in California Cooperative Oceanic Fisheries Investigations Reports

"State of the California Current 2014-15: Impacts of the warm-water "Blob"" in Reports of California Cooperative Oceanic Fisheries Investigations

"California's marine fisheries: tradeoffs in transition" in Ecosystems of California

"Zooplankton Data from High-Frequency Coastal Transects: Enriching the Contributions of Ocean Observing Systems to Ecosystem-Based Management in the Northern California Current" in Coastal Ocean Observing Systems

"Marine Fisheries" in Ecosystems of California

"Early ocean distribution of juvenile Chinook salmon in an upwelling ecosystem" in Fisheries Oceanography

"How Does Variability in Aragonite Saturation Proxies Impact Our Estimates of the Intensity and Duration of Exposure to Aragonite Corrosive Conditions in a Coastal Upwelling System?" in AGU Ocean Sciences Meeting

"The origins of the anomalous warming in the California coastal ocean and San Francisco Bay during 2014–2016" in Journal of Geophysical Research: Oceans

"Oceanographic Context for Characterization and Future Evaluation, California North Coast MPA Baseline Study, 2014 to 2016" in Technical Report to California Sea Grant 

"State of the California Current 2016-17: Still Anything But "Normal" in the North" in UC San Diego

"Massive Mortality of a Planktivorous Seabird in Response to a Marine Heatwave: A Citizen Science Case-study" in AGU Fall Meeting

"The ‘Great Disconnect’: Declines in American lobster benthic recruitment despite surging spawning stock linked to the pelagic food web" in Bulletin of Marine Science

"Massive Mortality of a Planktivorous Seabird in Response to a Marine Heatwave" in Geophysical Research Letters

"Bridging the spawner-recruit disconnect: trends in American lobster recruitment linked to the pelagic food web" in Bulletin of Marine Science

"Ocean acidification and hypoxia can have opposite effects on rockfish otolith growth" in Journal of Experimental Marine Biology and Ecology

“Climate-Driven Variability In Euphausia Pacifica Size Distributions Off Northern California” in Progress in Oceanography

"Effects of hypoxia on the behavior and physiology of kelp forest fishes" in Global Change Biology

"Copepod responses to, and recovery from, the recent marine heatwave in the Northeast Pacific" in PICES Press

"State of the California Current 2019–2020: Back to the Future With Marine Heatwaves?" in Frontiers in Marine Science

"State of the California Current Ecosystem in 2021: Winter is coming?" in Frontiers in Marine Science

"Corrigendum: State of the California Current 2019–2020: Back to the Future With Marine Heatwaves?" in Frontiers in Marine Science

"William T. Peterson Commemorative Issue: Progress in Oceanography" in Progress in Oceanography